BioPreDyn

From Data to Models

New Bioinformatics Methods and Tools for Data-Driven, Predictive Dynamic Modelling in Biotechnological Applications

News

Systematic Construction of Kinetic Models from Genome- Scale Metabolic Networks (2013)

Stanford, N.J., Lubitz, T., Smallbone, K., Klipp, E., Mendes, P., Liebermeister, W.

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Path2Models: Large-scale generation of computational models from biochemical pathway maps (2013)

Büchel, F. et al.

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BioServices: a common Python package to access biological Web Services programmatically (2013)

Cokelaer, T., Pultz, D., Harder, L.M., Serra-Musach, J., Saez-Rodriguez, J.

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Cyrface: An interface from Cytoscape to R that provides a user interface to R packages (2013)

Goncalves, E., and Saez-Rodriguez, J.

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Metabolic Control Analysis: Rereading Reder (2013)

Smallbone, K.

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An analysis of a 'community-driven' reconstruction of the human metabolic network (2013)

Swainston, N., Mendes, P., Kell, D.

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Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters (2013)

Hensman, J., Lawrence, N.D., Rattray, M.

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Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming (2013)

Guziolowski, C., Videla, S., Eduati, F., Thiele, S., Cokelaer, T., Siegel, A., Saez-Rodriguez, J.

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Large-scale metabolic models: from reconstruction to differential equations (2013)

Smallbone, K., Mendes, P

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Differential network analysis for the identification of condition-specific pathway activity and regulation (2013)

Gambardella, G., Moretti, M.N., de Cegli, R., Cardone, L., Peron, A., di Bernardo, D.

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