publication | BioPreDyn

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics (2014)

Egea, J.A., Henriques, D., Cokelaer, T., Villaverde, A., Banga, J., and Saez-Rodriguez, J.

MIDER: Network Inference with Mutual Information Distance and Entropy Reduction (2014)

Villaverde, A.F., Ross, J., Banga, J.R.

Classification of transient behaviours in a time-dependent toggle switch model (2014)

Verd, B., Crombach, A., and Jaeger, J.

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach (2014)

Meyer, P., Cokelaer, T., Chandran, D., Kim, K.H., Loh, P.R., Tucker, G., Lipson, M., Berger, B., Kreutz, C., Raue, A., Steiert, B., Timmer, J., Bilal, E., Sauro, H. M., Stolovitzky, G., Saez-Rodriguez, J.

pdf here

publication

A mathematical model of the colon crypt capturing compositional dynamic interactions between cell types (2014)

Smallbone, K., and Corfe, B.M.

pdf here

publication

Standardized network reconstruction of CHO cell metabolism (2013)

Smallbone, K.

pdf here

publication

Network based elucidation of drug response: from modulators to targets (2013)

Iorio, F., Saez-Rodriguez, J., Bernardo, D.

pdf here

publication

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools (2013)

Chaouiya, C. et al.

pdf here

publication

Reverse engineering and identification in systems biology: strategies, perspectives and challenges. (2013)

Villaverde, A.F., Banga, J.R.

pdf here

publication

Systematic Construction of Kinetic Models from Genome- Scale Metabolic Networks (2013)

Stanford, N.J., Lubitz, T., Smallbone, K., Klipp, E., Mendes, P., Liebermeister, W.

pdf here

publication